SNP Profiles matching IMC 14

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
1._RUQ_1637	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
2._CC_137	_	_	CT	TT	AA	_	TT	CT	CT	AA	AA	CT	AG	CT
3._RUQ_1637	_	AG	CT	_	_	_	TT	_	_	_	_	CT	AG	_
4._CC_137	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
5._CC_137	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
6._CC_137	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
7._GC-01-134-7-11	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
8._GC-01-134-7-11	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
9._GC-01-134-7-11	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
10._CC_137	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
11._GC-01-134-7-11	CT	AG	CT	TT	AA	CC	TT	CT	CT	AA	AA	CT	AG	CT
12._CC_10	_	_	CT	TT	AA	_	GT	CT	CT	AA	AA	CT	AG	CT
13._CC_10	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
14._CC_10	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
15._CC_10	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
16._CC_10	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
17._GC-08-271-8-43	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
18._GC-08-271-8-43	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
19._GC-08-271-8-43	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
20._GC-08-271-8-43	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
21._CC_10	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
22._CC_10	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT
23._GC-08-271-8-43	CT	AG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	GG	GG	AG	CT	CC	CC	TT	CT	CC	AG
1._RUQ_1637	AA	GG	TT	CC	GG	GG	AG	CT	CC	CC	TT	CT	CC	AG
2._CC_137	AA	GG	TT	CC	GG	GG	AG	CT	_	CC	TT	CT	CC	AG
3._RUQ_1637	_	_	_	CC	GG	GG	_	CT	CC	CC	TT	-	CC	AG
4._CC_137	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC	AG
5._CC_137	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC	AG
6._CC_137	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC	AG
7._GC-01-134-7-11	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC	AG
8._GC-01-134-7-11	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC	AG
9._GC-01-134-7-11	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC	AG
10._CC_137	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC	AG
11._GC-01-134-7-11	AA	GG	TT	CC	GG	GG	GG	CT	CC	CC	TT	CT	CC	AG
12._CC_10	AA	GG	TT	CC	GG	GT	AG	CT	_	CC	TT	CT	CC	AG
13._CC_10	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
14._CC_10	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
15._CC_10	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
16._CC_10	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
17._GC-08-271-8-43	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
18._GC-08-271-8-43	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
19._GC-08-271-8-43	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
20._GC-08-271-8-43	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
21._CC_10	AA	GG	TT	CC	GG	GT	AG	CT	AC	CC	TT	CT	CC	AG
22._CC_10	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG
23._GC-08-271-8-43	AA	GG	TT	CC	GG	GT	GG	CT	AC	CC	TT	CT	CC	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CT	AA	CC	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
1._RUQ_1637	GG	AA	CT	AA	CC	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
2._CC_137	GG	_	CT	AA	_	AC	_	GT	CC	TT	GG	X_X	X_X	X_X
3._RUQ_1637	_	AA	CT	AA	CC	AC	CT	GT	CC	_	_	X_X	X_X	X_X
4._CC_137	GG	AA	CT	AA	CC	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
5._CC_137	GG	AA	CT	AA	CC	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
6._CC_137	GG	AA	CT	AA	CC	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
7._GC-01-134-7-11	GG	AA	CT	AA	CC	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
8._GC-01-134-7-11	GG	AA	CT	AA	CC	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
9._GC-01-134-7-11	GG	AA	CT	AA	CC	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
10._CC_137	GG	AA	CT	AA	CC	AC	CT	GT	CC	_	GG	X_X	X_X	X_X
11._GC-01-134-7-11	GG	AA	CT	AA	CC	AC	CT	GT	CC	_	GG	X_X	X_X	X_X
12._CC_10	GG	_	CT	AG	_	AC	_	GT	CC	TT	GG	X_X	X_X	X_X
13._CC_10	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
14._CC_10	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
15._CC_10	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
16._CC_10	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
17._GC-08-271-8-43	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
18._GC-08-271-8-43	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
19._GC-08-271-8-43	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
20._GC-08-271-8-43	GG	AT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
21._CC_10	GG	TT	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
22._CC_10	GG	AT	_	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
23._GC-08-271-8-43	GG	AT	_	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X

Input profile: IMC_14 RUQ_1634

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._CC_137 RUQ_1637

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._CC_137

identical
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

3._CC_137 RUQ_1637

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._CC_137

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 6

Dapeng Zhang, 2016

5._CC_137

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 5

Dapeng Zhang, 2016

6._CC_137

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1711 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._CC_137

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1711 1

Dapeng Zhang, 2016

11._CC_137 GC-01-134-7-11

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._CC_10

95.3 %
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

13._CC_10

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 9

Dapeng Zhang, 2016

14._CC_10

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 7

Dapeng Zhang, 2016

15._CC_10

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 5

Dapeng Zhang, 2016

16._CC_10

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8843 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._CC_10 GC-08-271-8-43

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

18._CC_10 GC-08-271-8-43

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

19._CC_10 GC-08-271-8-43

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: Dead

20._CC_10 GC-08-271-8-43

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: Dead

21._CC_10

91 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Trial 1/Rep 1 45

Dapeng Zhang, 2016

22._CC_10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 2

Dapeng Zhang, 2016

23._CC_10 GC-08-271-8-43

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1442	4	TcSNP1414	5	TcSNP1350
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25